Multi factor Authentication with Content Matrix

Dear All, 

We are trying to connect to the SharePoint site from Metalogix which has multi factors authentication setup. ( login with the O365 credentials and then SMS code verification).

Considering the multifactor authentication, we are trying to connect to the site using "Browser based authentication" from metalogix which seems to be failing. 

We are receiving error after authentication that - "Credentials are not sufficient".

Possible - 

1. We are executing the content matrix from server where we usually login with admin account and wanted to connect to the SharePoint site through different account.  

- Is there any way that we forcefully request browser to login with different account ? (possibly with the registry entries) ?

- Or can you please let me know on any other possibility to connect to the SP site. 

Thanks in advance for your help. 

Kind Regards,

Amogh